Big Data Analysis NGS Data RNA-seq

RNA-Seq Analysis Tutorial – Grosmannia clavigera

After following the steps in the above video, the files used for uploading sample and genome data are referenced by the SVL files contained in this zip: click here to download it. Those steps in...

NGS Data RNA-seq

RNA-Seq Data Analysis – Arabidopsis thaliana

  Arabidopsis. is a well studied organism that is often viewed as a model organism in plant biology. Some of it’s important advantages include: -Small size of genome -Short generatio...


RNA-Seq – RSEM Simulation

RNA-Seq – RSEM Simulation In RNA-Seq, we can use simulated data, and this video shows how using the rsem-simulate-reads module. In this tutorial we’ll be using the RNA-Seq function ...


RNA-Seq Analysis of Macrophages in mouse model Lung Cancer

Pine Biotech - Profiling Tumor-associated Macrophages Using RNA-Seq from Tom Koch Download a copy of this presentation. Project Title: Applying Factor Regression Analysis in a Mouse Model St...

Big Data Analysis Data Integration and Modeling Machine Learning RNA-seq


For information about how to get to the data needed to run machine learning, please view Part 1. In this video, we go through several types of machine learning options on the T-BioInfo Platform: Qu...

Big Data Analysis RNA-seq

RNA-Seq Analysis with Arabidopsis thaliana - Part 1, Gene Expression

The data referenced in the above video is from GSE57953, and is stored on our server in an error corrected format. The file to upload as NGS data is inside this ZIP file.

Big Data Analysis RNA-seq

RNA-Seq Analysis Runthrough – Gene Expression

In this tutorial we’ll be running a One-Button RNA-Seq pipeline. To do this click RNA-Seq, use pre-defined options and then pick your one button, either Gene or Differential Expression. N...