Big Data Analysis

Big Data Analysis NGS Data RNA-seq

RNA-Seq Analysis Tutorial – Grosmannia clavigera

After following the steps in the above video, the files used for uploading sample and genome data are referenced by the SVL files contained in this zip: click here to download it. Those steps in...

Big Data Analysis NGS Data RNA-seq

RNA-Seq Analysis with Grosmannia clavigera – Part 1, Background

INTRO T-Bioinfo is a flexible bioinformatics computational system that provides an intuitive and user friendly interface for building pipelines of bioinformatics algorithms for the analysis of big...

Big Data Analysis Data Integration and Modeling Machine Learning NGS Data RNA-seq

RNA-Seq Data Analysis – Grosmannia clavigera

What is RNA-seq? RNA Sequencing, also known as RNA-seq, is a method for processing Next Generation Sequencing (NGS) data. RNA transcription occurs in an organism when genes are expressed, and the ...

Big Data Analysis Machine Learning

Data Mining / Post Processing

To use the Data Mining analysis section, the user has to have one or more tables that are in a proper format. It can operate with genomic, transcriptomic, proteomic or metabolomic data that ...

Big Data Analysis Data Integration and Modeling Machine Learning RNA-seq

RNA-SEQ ANALYSIS WITH ARADIOPSIS THALIANA – PART 2, MACHINE LEARNING

For information about how to get to the data needed to run machine learning, please view Part 1. In this video, we go through several types of machine learning options on the T-BioInfo Platform: Qu...

Big Data Analysis RNA-seq

RNA-Seq Analysis with Arabidopsis thaliana - Part 1, Gene Expression

The data referenced in the above video is from GSE57953, and is stored on our server in an error corrected format. The file to upload as NGS data is inside this ZIP file.

Big Data Analysis RNA-seq

RNA-Seq Analysis Runthrough – Gene Expression

In this tutorial we’ll be running a One-Button RNA-Seq pipeline. To do this click RNA-Seq, use pre-defined options and then pick your one button, either Gene or Differential Expression. N...

Big Data Analysis ChIP-seq NGS Data

ChIP-Seq Data Analysis – Arabidopsis thaliana

In this tutorial we be using chIP-Seq on the T-BioInfo platform. We’ll be getting out data from a research paper, “Natural variation of H3K27me3 distribution between two Arabidopsis ...